Amazon Fulfillment for Shopify in 2026: Easy & Fast Setup

Last update January 23, 2026

Overview

As your Shopify store grows, managing storage, packing, and shipping can quickly become overwhelming.

What if you could offer fast, reliable shipping without running your own warehouse?

Amazon’s Multi-Channel Fulfillment (MCF) makes it possible.

With MCF, you store your products in Amazon fulfillment centers, and Amazon handles the rest—picking, packing, and shipping every order from your store. This means you can deliver a professional customer experience, reduce operational headaches, and scale your business seamlessly across multiple sales channels.

Can Amazon fulfill my Shopify orders?

Yes, Amazon MCF allows Shopify merchants to use Amazon’s fulfillment centers for orders placed on their Shopify store. Once inventory is stored in Amazon, each Shopify order can be picked, packed, and shipped according to Amazon’s logistics standards.

This ensures customers receive their orders quickly and reliably. Shopify merchants maintain visibility over inventory and orders, while Amazon takes care of the fulfillment details, creating a consistent, professional experience for buyers.

Why should you transfer Shopify orders to Amazon? Key benefits

Using Amazon fulfillment for Shopify brings several strategic benefits:

• Fast & Predictable Delivery: Amazon’s network ensures orders reach customers quickly, with tracking and reliable shipping standards.
• Seamless Store Management: Automating fulfillment reduces the operational burden of packing, shipping, and handling returns.
• Simplified Workflow: By letting Amazon handle logistics, you save time, minimize mistakes, and can focus on growing your Shopify store.
• Easy Multi-Channel Expansion: Even if you sell on other platforms alongside Shopify, Amazon MCF can handle orders efficiently across channels, providing consistent fulfillment.

How to setup Shopify Fulfilled by Amazon

There are a few key things to keep in mind when preparing for your Amazon Fulfillment for Shopify Integration:

1. Keep Your Inventory Accurate
For Amazon Multi-Channel Fulfillment (MCF) to work seamlessly, your inventory in Amazon fulfillment centers must be accurate and properly categorized. Additionally, your Shopify products should have matching SKU codes with the corresponding items on Amazon.

2. Route Orders Correctly
Shopify orders need to be sent to Amazon in a way that aligns with MCF’s shipping standards and processing requirements.

3. Avoid Manual Hassle
Handling this process manually can be time-consuming, especially if you sell across multiple channels.

SOLUTION: Automate with Nembol
By connecting Shopify to Amazon MCF, Nembol automates the entire workflow: it synchronizes inventory, transfers orders for fulfillment, and keeps everything updated—saving you time and reducing errors.

Fulfill Shopify orders with Amazon delivery

Here’s a step-by-step guide on how to setup:

1. Create your Nembol account.
2. Connect your Shopify store to Nembol, and your products will be imported automatically.
3. Connect your Amazon, your products will connect with corresponding Shopify ones on the base of matching SKUs.
4. Activate MCF in your Amazon’s settings within Nembol.
5. When you receive an order on Shopify, Nembol will send the pick-and-pack request to Amazon MCF for eligible products.
6. Amazon MCF handles picking, packing, and shipping.
7. Nembol automatically updates stock levels for FBM (non-FBA/non-MCF) products inside Amazon.
8. Amazon MCF will take care of adjusting the stock count of FBA and MCF products.

With Amazon MCF and Nembol working together, Shopify merchants can turn their store into a fully automated fulfillment hub, where orders are shipped quickly, inventory stays accurate, and scaling to new channels doesn’t add extra work.

Use cases 

Let’s take a look at the two most popular scenarios where you might want to use Amazon Fulfillment for Shopify:

Use Case #1

You sell mainly on Amazon but want to expand to Shopify without managing a separate warehouse.

With Nembol, you can:

1. List your Amazon products directly on Shopify.

2. Activate Amazon MCF to automatically fulfill Shopify orders.

3. Keep inventory synced across all sales channels.

Use Case #2

You sell primarily on Shopify and want to take advantage of Amazon’s warehouses and shipping network.

With Nembol, you can:

1. Connect Shopify and Amazon products with matching SKU codes.
2. Activate Amazon MCF for Shopify orders.
3. Automatically send pick-and-pack requests for every order while keeping inventory accurate.